Refactor evaluation scripts for multi-GPU execution
- Removed `run_evaluations_multi_gpu.sh` script as it was redundant. - Updated `run_experiments_multi_gpu.sh` to handle evaluation jobs instead of training. - Changed command-line options to support evaluation-specific parameters. - Implemented run directory discovery and validation for evaluation jobs. - Enhanced logging to capture evaluation details and outputs. - Added options for centralized output management and skipping existing results.
This commit is contained in:
1245
evaluate.py
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1245
evaluate.py
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@@ -1,354 +0,0 @@
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#!/usr/bin/env bash
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set -euo pipefail
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usage() {
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cat <<'USAGE'
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Usage:
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./run_evaluations_multi_gpu.sh --gpus 0,1,2 [options] [-- <common eval args>]
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Description:
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Discovers trained run directories (containing best_model.pt + train_config.json)
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and runs BOTH evaluations on each run:
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1) evaluate_next_event.py
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2) evaluate_horizon.py
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Jobs are distributed round-robin across the provided GPU list and each GPU runs
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at most one job at a time.
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Options:
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--gpus Comma-separated GPU ids (required), e.g. 0,1,2
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--runs-root Root directory containing run subfolders (default: runs)
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--pattern Shell glob to filter run folder basenames (default: *)
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--run-dirs-file Text file with one run_dir per line (overrides --runs-root)
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--horizons Horizon grid in years (space-separated list). If omitted, uses script defaults.
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--age-bins Age bin boundaries in years (space-separated list). If omitted, uses script defaults.
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--next-args-file File with one CLI argument per line appended only to evaluate_next_event.py
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--horizon-args-file File with one CLI argument per line appended only to evaluate_horizon.py
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--python Python executable/command (default: python)
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--log-dir Directory for logs (default: eval_logs)
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--dry-run Print commands without executing
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--help|-h Show this help
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Common eval args:
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Anything after `--` is appended to BOTH evaluation commands.
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Use this only for flags supported by BOTH scripts (e.g. --batch_size, --num_workers, --max_cpu_cores, --seed, --min_pos, --no_tqdm).
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Per-eval args:
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For eval-specific flags (e.g. evaluate_horizon.py --topk_list / --workload_fracs), use --horizon-args-file.
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Args files are "one argument per line"; blank lines are ignored.
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Examples:
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./run_evaluations_multi_gpu.sh --gpus 0,1
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./run_evaluations_multi_gpu.sh --gpus 0,1 --runs-root runs --pattern "delphi_*" \
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--horizons 0.25 0.5 1 2 5 10 --age-bins 40 45 50 55 60 65 70 75 inf -- --batch_size 512 --num_workers 4
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./run_evaluations_multi_gpu.sh --gpus 0,1 --runs-root runs --pattern "delphi_*" \
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-- --batch_size 512 --num_workers 4 --max_cpu_cores -1
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USAGE
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}
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runs_root="runs"
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pattern="*"
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run_dirs_file=""
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gpu_list=""
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python_cmd="python"
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log_dir="eval_logs"
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dry_run=0
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horizons=()
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age_bins=()
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extra_args=()
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next_args_file=""
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horizon_args_file=""
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while [[ $# -gt 0 ]]; do
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case "$1" in
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--gpus)
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gpu_list="${2-}"
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shift 2
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;;
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--runs-root)
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runs_root="${2-}"
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shift 2
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;;
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--pattern)
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pattern="${2-}"
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shift 2
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;;
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--run-dirs-file)
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run_dirs_file="${2-}"
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shift 2
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;;
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--next-args-file)
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next_args_file="${2-}"
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shift 2
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;;
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--horizon-args-file)
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horizon_args_file="${2-}"
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shift 2
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;;
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--python)
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python_cmd="${2-}"
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shift 2
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;;
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--log-dir)
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log_dir="${2-}"
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shift 2
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;;
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--dry-run)
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dry_run=1
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shift
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;;
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--horizons)
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shift
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horizons=()
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while [[ $# -gt 0 && "$1" != --* ]]; do
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horizons+=("$1")
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shift
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done
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;;
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--age-bins)
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shift
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age_bins=()
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while [[ $# -gt 0 && "$1" != --* ]]; do
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age_bins+=("$1")
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shift
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done
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;;
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--help|-h)
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usage
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exit 0
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;;
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--)
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shift
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extra_args=("$@")
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break
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;;
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*)
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echo "Unknown argument: $1" >&2
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usage
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exit 2
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;;
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esac
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done
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if [[ -z "$gpu_list" ]]; then
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echo "Error: --gpus is required (e.g. --gpus 0,1,2)." >&2
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exit 2
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fi
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read_args_file() {
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local f="${1-}"
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if [[ -z "$f" ]]; then
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return 0
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fi
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if [[ ! -f "$f" ]]; then
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echo "Error: args file not found: $f" >&2
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exit 2
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fi
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while IFS= read -r line || [[ -n "$line" ]]; do
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line="${line%$'\r'}" # handle CRLF
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[[ -z "$line" ]] && continue
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printf '%s\n' "$line"
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done < "$f"
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}
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mkdir -p "$log_dir"
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IFS=',' read -r -a gpus <<< "$gpu_list"
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if [[ ${#gpus[@]} -lt 1 ]]; then
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echo "Error: parsed 0 GPUs from --gpus '$gpu_list'" >&2
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exit 2
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fi
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sanitize() {
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# Replace any char outside [A-Za-z0-9._-] with '_'
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local s="${1-}"
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s="${s//[^A-Za-z0-9._-]/_}"
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printf '%s' "$s"
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}
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# Discover run directories
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run_dirs=()
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if [[ -n "$run_dirs_file" ]]; then
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if [[ ! -f "$run_dirs_file" ]]; then
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echo "Error: --run-dirs-file not found: $run_dirs_file" >&2
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exit 2
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fi
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while IFS= read -r line || [[ -n "$line" ]]; do
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line="${line%$'\r'}" # handle CRLF
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[[ -z "$line" ]] && continue
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run_dirs+=("$line")
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done < "$run_dirs_file"
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else
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if [[ ! -d "$runs_root" ]]; then
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echo "Error: runs root not found: $runs_root" >&2
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exit 2
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fi
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shopt -s nullglob
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for d in "$runs_root"/$pattern; do
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[[ -d "$d" ]] || continue
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[[ -f "$d/best_model.pt" ]] || continue
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[[ -f "$d/train_config.json" ]] || continue
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run_dirs+=("$d")
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done
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shopt -u nullglob
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fi
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if [[ ${#run_dirs[@]} -eq 0 ]]; then
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echo "Error: no run directories found." >&2
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exit 1
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fi
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echo "Queued ${#run_dirs[@]} run(s) across ${#gpus[@]} GPU(s): ${gpus[*]}"
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_tmpdir=""
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cleanup() {
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if [[ -n "${_tmpdir}" && -d "${_tmpdir}" ]]; then
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rm -rf "${_tmpdir}"
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fi
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}
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trap cleanup EXIT
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_tmpdir="$(mktemp -d)"
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# Prepare per-GPU queue files (TSV: job_id \t run_dir)
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queue_files=()
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for i in "${!gpus[@]}"; do
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qfile="${_tmpdir}/queue_${i}.tsv"
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: > "$qfile"
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queue_files+=("$qfile")
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done
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job_id=0
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for run_dir in "${run_dirs[@]}"; do
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slot=$((job_id % ${#gpus[@]}))
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printf '%s\t%s\n' "$job_id" "$run_dir" >> "${queue_files[$slot]}"
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job_id=$((job_id + 1))
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done
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pids=()
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for i in "${!gpus[@]}"; do
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gpu="${gpus[$i]}"
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qfile="${queue_files[$i]}"
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(
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export CUDA_VISIBLE_DEVICES="$gpu"
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while IFS=$'\t' read -r jid run_dir || [[ -n "${jid-}" ]]; do
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[[ -z "${jid-}" ]] && continue
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[[ -z "${run_dir-}" ]] && continue
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ts="$(date +%Y%m%d-%H%M%S)"
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safe_run="$(sanitize "$(basename "$run_dir")")"
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log_file="${log_dir}/eval_${jid}_gpu${gpu}_${safe_run}_${ts}.log"
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{
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echo "===== EVALUATION START ====="
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echo "timestamp: $ts"
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echo "gpu: $gpu"
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echo "job_id: $jid"
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echo "run_dir: $run_dir"
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if [[ ${#horizons[@]} -gt 0 ]]; then
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echo "horizons: ${horizons[*]}"
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fi
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if [[ ${#age_bins[@]} -gt 0 ]]; then
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echo "age_bins: ${age_bins[*]}"
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fi
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if [[ -n "${next_args_file}" ]]; then
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echo "next_args_file: ${next_args_file}"
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fi
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if [[ -n "${horizon_args_file}" ]]; then
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echo "horizon_args_file: ${horizon_args_file}"
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fi
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if [[ ${#extra_args[@]} -gt 0 ]]; then
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echo "extra_args: ${extra_args[*]}"
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fi
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echo "============================"
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} > "$log_file"
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# Build argv arrays
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next_cmd=("$python_cmd" evaluate_next_event.py --run_dir "$run_dir")
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if [[ ${#age_bins[@]} -gt 0 ]]; then
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next_cmd+=(--age_bins "${age_bins[@]}")
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fi
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if [[ -n "${next_args_file}" ]]; then
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while IFS= read -r a; do
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next_cmd+=("$a")
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done < <(read_args_file "${next_args_file}")
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fi
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if [[ ${#extra_args[@]} -gt 0 ]]; then
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next_cmd+=("${extra_args[@]}")
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fi
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hor_cmd=("$python_cmd" evaluate_horizon.py --run_dir "$run_dir")
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if [[ ${#horizons[@]} -gt 0 ]]; then
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hor_cmd+=(--horizons "${horizons[@]}")
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fi
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if [[ ${#age_bins[@]} -gt 0 ]]; then
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hor_cmd+=(--age_bins "${age_bins[@]}")
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fi
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if [[ -n "${horizon_args_file}" ]]; then
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while IFS= read -r a; do
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hor_cmd+=("$a")
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done < <(read_args_file "${horizon_args_file}")
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fi
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if [[ ${#extra_args[@]} -gt 0 ]]; then
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hor_cmd+=("${extra_args[@]}")
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fi
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echo "[GPU $gpu] START job $jid: $run_dir"
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if [[ $dry_run -eq 1 ]]; then
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{
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echo "[DRY-RUN] next-event cmd:"; printf ' %q' "${next_cmd[@]}"; echo
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echo "[DRY-RUN] horizon cmd:"; printf ' %q' "${hor_cmd[@]}"; echo
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echo "[DRY-RUN] log: $log_file"
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} | tee -a "$log_file"
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echo "[GPU $gpu] DONE job $jid (dry-run)"
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continue
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fi
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set +e
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{
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echo "--- RUN evaluate_next_event.py ---"
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printf 'cmd:'; printf ' %q' "${next_cmd[@]}"; echo
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"${next_cmd[@]}"
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rc1=$?
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echo "exit_code_next_event: $rc1"
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echo "--- RUN evaluate_horizon.py ---"
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printf 'cmd:'; printf ' %q' "${hor_cmd[@]}"; echo
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"${hor_cmd[@]}"
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rc2=$?
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echo "exit_code_horizon: $rc2"
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echo "===== EVALUATION END ======="
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} >> "$log_file" 2>&1
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set -e
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if [[ $rc1 -ne 0 || $rc2 -ne 0 ]]; then
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echo "[GPU $gpu] FAIL job $jid (next=$rc1 horizon=$rc2). Log: $log_file" >&2
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exit 1
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fi
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echo "[GPU $gpu] DONE job $jid (log: $log_file)"
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done < "$qfile"
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) &
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pids+=("$!")
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done
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fail=0
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for pid in "${pids[@]}"; do
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if ! wait "$pid"; then
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fail=1
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fi
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done
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if [[ $fail -ne 0 ]]; then
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echo "One or more workers failed." >&2
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exit 1
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fi
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echo "All evaluations complete."
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@@ -4,23 +4,41 @@ set -euo pipefail
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usage() {
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cat <<'USAGE'
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Usage:
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./run_experiments_multi_gpu.sh --gpus 0,1,2 [--experiments experiments.txt] [--cmd "python train.py"] [--log-dir experiment_logs] [--dry-run] [-- <extra train.py args>]
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./run_experiments_multi_gpu.sh --gpus 0,1,2 [--runs-file runs_to_eval.txt | --runs-root runs] [--cmd "python evaluate.py"] [--log-dir evaluation_logs] [--out-root eval_outputs] [--skip-existing] [--dry-run] [-- <extra evaluate.py args>]
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|
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Description:
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Distributes rows from experiments.txt across multiple GPUs (round-robin) and runs
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Distributes evaluation jobs across multiple GPUs (round-robin) and runs
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at most one job per GPU at a time.
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A job is a run directory containing:
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- train_config.json
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- best_model.pt
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By default, run directories are auto-discovered under --runs-root (default: runs).
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Alternatively, provide --runs-file with one run_dir per line.
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Examples:
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# Auto-discover run dirs under ./runs
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./run_experiments_multi_gpu.sh --gpus 0,1,2
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./run_experiments_multi_gpu.sh --gpus 0,1 --experiments experiments.txt -- --batch_size 64 --max_epochs 50
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./run_experiments_multi_gpu.sh --gpus 3 --cmd "python train.py" -- --loss_type discrete_time_cif
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# Use an explicit list of run directories
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./run_experiments_multi_gpu.sh --gpus 0,1 --runs-file runs_to_eval.txt
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# Centralize outputs (CSV bundle + summary JSON) under eval_outputs/
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./run_experiments_multi_gpu.sh --gpus 0,1 --out-root eval_outputs
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# Forward args to evaluate.py
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./run_experiments_multi_gpu.sh --gpus 0,1 -- --batch_size 512 --num_workers 8
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USAGE
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}
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experiments_file="experiments.txt"
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runs_file=""
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runs_root="runs"
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gpu_list=""
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cmd_str="python train.py"
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log_dir="experiment_logs"
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cmd_str="python evaluate.py"
|
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log_dir="evaluation_logs"
|
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out_root=""
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skip_existing=0
|
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dry_run=0
|
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extra_args=()
|
||||
|
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@@ -30,8 +48,12 @@ while [[ $# -gt 0 ]]; do
|
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gpu_list="${2-}"
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shift 2
|
||||
;;
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--experiments|-f)
|
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experiments_file="${2-}"
|
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--runs-file|-f)
|
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runs_file="${2-}"
|
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shift 2
|
||||
;;
|
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--runs-root)
|
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runs_root="${2-}"
|
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shift 2
|
||||
;;
|
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--cmd)
|
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@@ -42,6 +64,14 @@ while [[ $# -gt 0 ]]; do
|
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log_dir="${2-}"
|
||||
shift 2
|
||||
;;
|
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--out-root)
|
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out_root="${2-}"
|
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shift 2
|
||||
;;
|
||||
--skip-existing)
|
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skip_existing=1
|
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shift
|
||||
;;
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--dry-run)
|
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dry_run=1
|
||||
shift
|
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@@ -70,11 +100,6 @@ fi
|
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|
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mkdir -p "$log_dir"
|
||||
|
||||
if [[ ! -f "$experiments_file" ]]; then
|
||||
echo "Error: experiments file not found: $experiments_file" >&2
|
||||
exit 2
|
||||
fi
|
||||
|
||||
IFS=',' read -r -a gpus <<< "$gpu_list"
|
||||
if [[ ${#gpus[@]} -lt 1 ]]; then
|
||||
echo "Error: parsed 0 GPUs from --gpus '$gpu_list'" >&2
|
||||
@@ -85,7 +110,7 @@ fi
|
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# shellcheck disable=SC2206
|
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cmd=($cmd_str)
|
||||
if [[ ${#cmd[@]} -lt 2 ]]; then
|
||||
echo "Error: --cmd should look like 'python train.py'" >&2
|
||||
echo "Error: --cmd should look like 'python evaluate.py'" >&2
|
||||
exit 2
|
||||
fi
|
||||
|
||||
@@ -107,28 +132,81 @@ for i in "${!gpus[@]}"; do
|
||||
queue_files+=("$qfile")
|
||||
done
|
||||
|
||||
# Distribute experiments round-robin.
|
||||
exp_idx=0
|
||||
while IFS= read -r line || [[ -n "$line" ]]; do
|
||||
line="${line%$'\r'}" # handle CRLF
|
||||
[[ -z "$line" ]] && continue
|
||||
# Skip header if present
|
||||
if [[ "$line" == model_type,* ]]; then
|
||||
continue
|
||||
discover_runs() {
|
||||
local root="${1-}"
|
||||
if [[ -z "$root" ]]; then
|
||||
return 0
|
||||
fi
|
||||
if [[ ! -d "$root" ]]; then
|
||||
echo "Error: runs root not found: $root" >&2
|
||||
return 2
|
||||
fi
|
||||
|
||||
slot=$((exp_idx % ${#gpus[@]}))
|
||||
# Prefix a stable experiment index for logging.
|
||||
printf '%s,%s\n' "$exp_idx" "$line" >> "${queue_files[$slot]}"
|
||||
exp_idx=$((exp_idx + 1))
|
||||
done < "$experiments_file"
|
||||
# shellcheck disable=SC2016
|
||||
find "$root" -mindepth 1 -maxdepth 1 -type d -print 2>/dev/null |
|
||||
sort
|
||||
}
|
||||
|
||||
if [[ $exp_idx -eq 0 ]]; then
|
||||
echo "No experiments found in $experiments_file" >&2
|
||||
run_dirs=()
|
||||
if [[ -n "$runs_file" ]]; then
|
||||
if [[ ! -f "$runs_file" ]]; then
|
||||
echo "Error: runs file not found: $runs_file" >&2
|
||||
exit 2
|
||||
fi
|
||||
|
||||
while IFS= read -r line || [[ -n "$line" ]]; do
|
||||
line="${line%$'\r'}" # handle CRLF
|
||||
[[ -z "$line" ]] && continue
|
||||
[[ "$line" == \#* ]] && continue
|
||||
run_dirs+=("$line")
|
||||
done < "$runs_file"
|
||||
else
|
||||
while IFS= read -r d || [[ -n "${d-}" ]]; do
|
||||
[[ -z "${d-}" ]] && continue
|
||||
run_dirs+=("$d")
|
||||
done < <(discover_runs "$runs_root")
|
||||
fi
|
||||
|
||||
if [[ ${#run_dirs[@]} -eq 0 ]]; then
|
||||
if [[ -n "$runs_file" ]]; then
|
||||
echo "No run directories found in $runs_file" >&2
|
||||
else
|
||||
echo "No run directories found under $runs_root" >&2
|
||||
fi
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "Queued $exp_idx experiments across ${#gpus[@]} GPU(s): ${gpus[*]}"
|
||||
is_valid_run_dir() {
|
||||
local d="${1-}"
|
||||
[[ -d "$d" ]] || return 1
|
||||
[[ -f "$d/train_config.json" ]] || return 1
|
||||
[[ -f "$d/best_model.pt" ]] || return 1
|
||||
return 0
|
||||
}
|
||||
|
||||
valid_run_dirs=()
|
||||
for d in "${run_dirs[@]}"; do
|
||||
if is_valid_run_dir "$d"; then
|
||||
valid_run_dirs+=("$d")
|
||||
else
|
||||
echo "Skipping invalid run_dir (missing train_config.json or best_model.pt): $d" >&2
|
||||
fi
|
||||
done
|
||||
|
||||
if [[ ${#valid_run_dirs[@]} -eq 0 ]]; then
|
||||
echo "No valid run directories found." >&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Distribute evaluation jobs round-robin.
|
||||
job_idx=0
|
||||
for d in "${valid_run_dirs[@]}"; do
|
||||
slot=$((job_idx % ${#gpus[@]}))
|
||||
printf '%s,%s\n' "$job_idx" "$d" >> "${queue_files[$slot]}"
|
||||
job_idx=$((job_idx + 1))
|
||||
done
|
||||
|
||||
echo "Queued $job_idx evaluation job(s) across ${#gpus[@]} GPU(s): ${gpus[*]}"
|
||||
|
||||
sanitize() {
|
||||
# Replace any char outside [A-Za-z0-9._-] with '_'
|
||||
@@ -145,44 +223,53 @@ for i in "${!gpus[@]}"; do
|
||||
(
|
||||
export CUDA_VISIBLE_DEVICES="$gpu"
|
||||
|
||||
while IFS=',' read -r exp_id model_type loss_type age_encoder full_cov || [[ -n "${exp_id-}" ]]; do
|
||||
# Skip empty lines
|
||||
[[ -z "${exp_id-}" ]] && continue
|
||||
while IFS=',' read -r job_id run_dir || [[ -n "${job_id-}" ]]; do
|
||||
[[ -z "${job_id-}" ]] && continue
|
||||
[[ -z "${run_dir-}" ]] && continue
|
||||
|
||||
# Normalize booleans / strip whitespace
|
||||
full_cov="${full_cov//[[:space:]]/}"
|
||||
ts="$(date +%Y%m%d-%H%M%S)"
|
||||
safe_run="$(sanitize "$(basename "$run_dir")")"
|
||||
|
||||
# Decide output locations.
|
||||
out_dir_arg=()
|
||||
out_json=""
|
||||
if [[ -n "$out_root" ]]; then
|
||||
job_out_dir="${out_root%/}/run_${job_id}_${safe_run}"
|
||||
mkdir -p "$job_out_dir"
|
||||
out_json="$job_out_dir/evaluation_summary.json"
|
||||
out_dir_arg=(--out_dir "$job_out_dir" --output "$out_json")
|
||||
else
|
||||
out_json="$run_dir/evaluation_summary.json"
|
||||
fi
|
||||
|
||||
if [[ $skip_existing -eq 1 && -f "$out_json" ]]; then
|
||||
echo "[GPU $gpu] SKIP job $job_id: already exists ($out_json)"
|
||||
continue
|
||||
fi
|
||||
|
||||
run_cmd=("${cmd[@]}" \
|
||||
--model_type "$model_type" \
|
||||
--loss_type "$loss_type" \
|
||||
--age_encoder "$age_encoder")
|
||||
--run_dir "$run_dir" \
|
||||
--device cuda)
|
||||
|
||||
if [[ "$full_cov" == "True" || "$full_cov" == "true" || "$full_cov" == "1" ]]; then
|
||||
run_cmd+=(--full_cov)
|
||||
if [[ ${#out_dir_arg[@]} -gt 0 ]]; then
|
||||
run_cmd+=("${out_dir_arg[@]}")
|
||||
fi
|
||||
|
||||
if [[ ${#extra_args[@]} -gt 0 ]]; then
|
||||
run_cmd+=("${extra_args[@]}")
|
||||
fi
|
||||
|
||||
echo "[GPU $gpu] START exp $exp_id: model_type=$model_type loss_type=$loss_type age_encoder=$age_encoder full_cov=$full_cov"
|
||||
|
||||
ts="$(date +%Y%m%d-%H%M%S)"
|
||||
safe_model="$(sanitize "$model_type")"
|
||||
safe_loss="$(sanitize "$loss_type")"
|
||||
safe_age="$(sanitize "$age_encoder")"
|
||||
safe_cov="$(sanitize "$full_cov")"
|
||||
log_file="${log_dir}/exp_${exp_id}_gpu${gpu}_${safe_model}_${safe_loss}_${safe_age}_${safe_cov}_${ts}.log"
|
||||
echo "[GPU $gpu] START job $job_id: run_dir=$run_dir"
|
||||
|
||||
log_file="${log_dir}/eval_${job_id}_gpu${gpu}_${safe_run}_${ts}.log"
|
||||
{
|
||||
echo "===== EXPERIMENT START ====="
|
||||
echo "===== EVALUATION START ====="
|
||||
echo "timestamp: $ts"
|
||||
echo "gpu: $gpu"
|
||||
echo "exp_id: $exp_id"
|
||||
echo "model_type: $model_type"
|
||||
echo "loss_type: $loss_type"
|
||||
echo "age_encoder: $age_encoder"
|
||||
echo "full_cov: $full_cov"
|
||||
echo "job_id: $job_id"
|
||||
echo "run_dir: $run_dir"
|
||||
echo "out_root: ${out_root:-<default in run_dir>}"
|
||||
echo "out_json: $out_json"
|
||||
printf 'cmd:'
|
||||
printf ' %q' "${run_cmd[@]}"
|
||||
echo
|
||||
@@ -203,16 +290,16 @@ for i in "${!gpus[@]}"; do
|
||||
{
|
||||
echo "============================"
|
||||
echo "exit_code: $rc"
|
||||
echo "===== EXPERIMENT END ======="
|
||||
echo "===== EVALUATION END ======="
|
||||
} >> "$log_file"
|
||||
|
||||
if [[ $rc -ne 0 ]]; then
|
||||
echo "[GPU $gpu] FAIL exp $exp_id (exit=$rc). Log: $log_file" >&2
|
||||
echo "[GPU $gpu] FAIL job $job_id (exit=$rc). Log: $log_file" >&2
|
||||
exit "$rc"
|
||||
fi
|
||||
fi
|
||||
|
||||
echo "[GPU $gpu] DONE exp $exp_id (log: $log_file)"
|
||||
echo "[GPU $gpu] DONE job $job_id (log: $log_file)"
|
||||
done < "$qfile"
|
||||
) &
|
||||
|
||||
@@ -232,4 +319,4 @@ if [[ $fail -ne 0 ]]; then
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "All experiments complete."
|
||||
echo "All evaluations complete."
|
||||
|
||||
Reference in New Issue
Block a user